I built vim from source. But for some reason I can no longer underline my current line when vim loads .vimrc. I have to type underline commands manually which makes it work. 

Here is the output of my version command

    VIM - Vi IMproved 8.1 (2018 May 18, compiled Nov  5 2018 21:28:01)
    Included patches: 1-510
    Compiled by rshafigulin@rshafigulin-fedora-PC0PVGAT
    Huge version without GUI.  Features included (+) or not (-):
    +acl               +extra_search      +mouse_netterm     +tag_old_static
    +arabic            +farsi             +mouse_sgr         -tag_any_white
    +autocmd           +file_in_path      -mouse_sysmouse    -tcl
    +autochdir         +find_in_path      +mouse_urxvt       +termguicolors
    -autoservername    +float             +mouse_xterm       +terminal
    -balloon_eval      +folding           +multi_byte        +terminfo
    +balloon_eval_term -footer            +multi_lang        +termresponse
    -browse            +fork()            -mzscheme          +textobjects
    ++builtin_terms    +gettext           +netbeans_intg     +timers
    +byte_offset       -hangul_input      +num64             +title
    +channel           +iconv             +packages          -toolbar
    +cindent           +insert_expand     +path_extra        +user_commands
    +clientserver      +job               +perl              +vartabs
    +clipboard         +jumplist          +persistent_undo   +vertsplit
    +cmdline_compl     +keymap            +postscript        +virtualedit
    +cmdline_hist      +lambda            +printer           +visual
    +cmdline_info      +langmap           +profile           +visualextra
    +comments          +libcall           +python/dyn        +viminfo
    +conceal           +linebreak         +python3/dyn       +vreplace
    +cryptv            +lispindent        +quickfix          +wildignore
    +cscope            +listcmds          +reltime           +wildmenu
    +cursorbind        +localmap          +rightleft         +windows
    +cursorshape       +lua               +ruby              +writebackup
    +dialog_con        +menu              +scrollbind        +X11
    +diff              +mksession         +signs             +xfontset
    +digraphs          +modify_fname      +smartindent       -xim
    -dnd               +mouse             +startuptime       -xpm
    -ebcdic            -mouseshape        +statusline        +xsmp_interact
    +emacs_tags        +mouse_dec         -sun_workshop      +xterm_clipboard
    +eval              -mouse_gpm         +syntax            -xterm_save
    +ex_extra          -mouse_jsbterm     +tag_binary
       system vimrc file: "$VIM/vimrc"
         user vimrc file: "$HOME/.vimrc"
     2nd user vimrc file: "~/.vim/vimrc"
          user exrc file: "$HOME/.exrc"
           defaults file: "$VIMRUNTIME/defaults.vim"
      fall-back for $VIM: "/home/rshafigulin/myfs/opt/vim/share/vim"
    Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H     -fPIC -O2 -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1
    Linking: gcc   -L. -Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fstack-protector -rdynamic -Wl,-export-dynamic -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld   -L/usr/local/lib -Wl,--as-needed -o vim    -lSM -lICE -lXt -lX11 -lSM -lICE  -lm -ltinfo -lelf  -lselinux   -ldl  -L/usr/lib -llua -Wl,--enable-new-dtags -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fstack-protector-strong -L/usr/local/lib  -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc    -lruby -lpthread -ldl -lcrypt -lm

Here is my .vimrc

    set nocompatible              " be iMproved, required
    filetype off                  " required
    
    " set the runtime path to include Vundle and initialize
    set rtp+=~/.vim/bundle/Vundle.vim
    call vundle#begin()
    " alternatively, pass a path where Vundle should install plugins
    "call vundle#begin('~/some/path/here')
    
    " let Vundle manage Vundle, required
    Plugin 'VundleVim/Vundle.vim'
    
    Plugin 'tpope/vim-sensible.git'
    Plugin 'tpope/vim-fugitive'
    Plugin 'christoomey/vim-system-copy.git'
    Plugin 'tpope/vim-surround'
    Plugin 'majutsushi/tagbar'
    Plugin 'ctrlpvim/ctrlp.vim'
    Plugin 'tomtom/tcomment_vim'
    Plugin 'Valloric/YouCompleteMe'
    Plugin 'rdnetto/YCM-Generator'
    Plugin 'godlygeek/tabular.git'
    Plugin 'jiangmiao/auto-pairs.git'
    Plugin 'mileszs/ack.vim'
    Plugin 'Yggdroot/indentLine.git'
    Plugin 'vim-scripts/xoria256.vim.git'
    Plugin 'itchyny/lightline.vim.git'
    Plugin 'kana/vim-textobj-user.git'
    Plugin 'kana/vim-textobj-line.git'
    Plugin 'edkolev/tmuxline.vim.git'
    Plugin 'jeaye/color_coded.git'
    Plugin 'christoomey/vim-tmux-navigator.git'
    Plugin 'tpope/vim-vinegar.git'
    Plugin 'vim-scripts/Conque-GDB.git'
    " Plugin 'w0rp/ale.git'
    
    
    " All of your Plugins must be added before the following line
    call vundle#end()            " required
    filetype plugin indent on    " required
    
    colorscheme xoria256
    
    " To ignore plugin indent changes, instead use:
    "filetype plugin on
    
    " Highlight the search pattern.
    let mapleader="\<Space>"
    
    set directory=/tmp
    set history=1000
    set hlsearch
    set incsearch
    set ignorecase
    set smartcase
    set showbreak=…
    set linebreak
    set listchars=tab:►-,eol:¬,trail:●
    set relativenumber
    set number
    set tabstop=4 softtabstop=4 shiftwidth=4 expandtab
    retab
    " Underline current cursor line
    set cursorline
    hi clear CursorLine
    hi CursorLine gui=underline cterm=underline
    
    
    nnoremap <leader>l :set list!<cr>
    
    nnoremap <silent><F8> :nohlsearch<cr>
    
    nnoremap <leader>vv :vsp<cr>
    nnoremap <leader>ss :sp<cr>
    
    " Toggle the Tlist window using <F4>
    nnoremap <silent><F4> :TagbarToggle<cr>
    
    nnoremap <leader>fb :CtrlPBuffer<cr>
    nnoremap <leader>fm :CtrlPMixed<cr>
    nnoremap <leader>ff :CtrlP getcwd()<cr>
    nnoremap <leader>ft :CtrlPTag<cr>
    
    nnoremap <silent><leader>sv :source ~/.vimrc<cr>
    nnoremap <silent><leader>ev :edit ~/.vimrc<cr>
    nnoremap <silent><leader>et :edit ~/.tmux.conf<cr>
    
    nnoremap <silent><F9>       :cprev<cr>zz
    nnoremap <silent><F10>      :cnext<cr>zz
    nnoremap <silent><C-F9>     :lprev<cr>zz
    nnoremap <silent><C-F10>    :lnext<cr>zz
    nnoremap <silent><M-F9>     :cfirst<cr>
    nnoremap <silent><M-F10>    :clast<cr>
    nnoremap <silent><leader>mm :set lines=10000 columns=1000<cr>
    nnoremap <silent><leader>mn :set lines=999 columns=90<cr>
    
    " ================ Plugin Configuraiton  ====================
    
    " -------------- YouCompleteMe  -----------------
    let g:ycm_always_populate_location_list            = 1
    let g:ycm_autoclose_preview_window_after_insertion = 1
    let g:ycm_error_symbol                             = 'E>'
    let g:ycm_warning_symbol                           = 'W>'
    let g:ycm_confirm_extra_conf                       = 0
    
    " -------------- lightline  -----------------
    
    " display the plugin name at the mode component?
    function! LightlineMode()
      return expand('%:t') ==# '__Tagbar__' ? 'Tagbar':
            \ expand('%:t') ==# 'ControlP' ? 'CtrlP' :
            \ &filetype ==# 'unite' ? 'Unite' :
            \ &filetype ==# 'vimfiler' ? 'VimFiler' :
            \ &filetype ==# 'vimshell' ? 'VimShell' :
            \ lightline#mode()
    endfunction
    
    let g:lightline = {
          \ 'active': {
          \   'left': [ [ 'mode', 'paste' ],
          \             [ 'gitbranch', 'readonly', 'filename', 'modified' ] ]
          \ },
          \ 'component_function': {
          \   'gitbranch': 'fugitive#head',
          \   'mode': 'LightlineMode',
          \ },
          \ }
    
    
    
    " -------------- indentLine -----------------
    let g:indentLine_char = '|'
    
    " -------------- tagbar -----------------
    let g:tagbar_autoclose        = 1
    let g:tagbar_autofocus        = 1
    let g:tagbar_sort             = 1
    let g:tagbar_autoshowtag      = 1
    let g:tagbar_foldlevel        = 99
    let g:tagbar_show_linenumbers = -1
    
    " -------------- Ack -----------------
    let g:ackprg = 'ag --nogroup --nocolor --column'


These are the lines I'm talking about:

    " Underline current cursor line
    set cursorline
    hi clear CursorLine
    hi CursorLine gui=underline cterm=underline

Here is what it looks like now

[![enter image description here][1]][1]

Here is what I expect it to look like

[![enter image description here][2]][2]

To make it look as I expect it, I need to enter the following commands manually

    set cursorline
    hi clear CursorLine
    hi CursorLine gui=underline cterm=underline

My question is why vim no longer reacts to these commands from vimrc?

Here is my system description:

    $ uname -a
    Linux user-fedora-PC0PVGAT 4.18.16-200.fc28.x86_64 #1 SMP Sat Oct 20 23:53:47 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
    
    $ cat /etc/os-release
    NAME=Fedora
    VERSION="28 (Workstation Edition)"
    ID=fedora
    VERSION_ID=28
    PLATFORM_ID="platform:f28"
    PRETTY_NAME="Fedora 28 (Workstation Edition)"
    ANSI_COLOR="0;34"
    CPE_NAME="cpe:/o:fedoraproject:fedora:28"
    HOME_URL="https://fedoraproject.org/"
    SUPPORT_URL="https://fedoraproject.org/wiki/Communicating_and_getting_help"
    BUG_REPORT_URL="https://bugzilla.redhat.com/"
    REDHAT_BUGZILLA_PRODUCT="Fedora"
    REDHAT_BUGZILLA_PRODUCT_VERSION=28
    REDHAT_SUPPORT_PRODUCT="Fedora"
    REDHAT_SUPPORT_PRODUCT_VERSION=28
    PRIVACY_POLICY_URL="https://fedoraproject.org/wiki/Legal:PrivacyPolicy"
    VARIANT="Workstation Edition"
    VARIANT_ID=workstation

**EDIT**

After I started vim I ran a following command

    :verbose hi CursorLine

The result was

    CursorLine     xxx term=underline ctermbg=237 guibg=#3a3a3a
    	Last set from ~/.vim/bundle/xoria256.vim/colors/xoria256.vim line 42




  [1]: https://i.sstatic.net/aTQBT.png
  [2]: https://i.sstatic.net/Ntaz5.png