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In Vim, this issue has been addressed in 234d162 commit (>=v8.0.1387).

Solution: Don't show the message with --not-a-term was used.

So the message is only displayed when user hasn't redirected the stdin.

Similar issue has been addressed in the recent version of Neovim (>=v0.2.2-dev) which you could use instead of Vim.

Once NVim v0.2.2 is released, you should be able to run:

$ echo foo | nvim -

without having the message.